3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04680

Details:

PFam ID : PF04680

PFam Domain Description : Opioid growth factor receptor repeat

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 8

Average sequence length: 18.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04680	D3ECS8_GEOS4_201_286	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04680	Q6PK21_HUMAN_473_492	57

Sequence based PCA Plot of the family - PF04680 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay