3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04679

Details:

PFam ID : PF04679

PFam Domain Description : ATP dependent DNA ligase C terminal region

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 1122

Average sequence length: 102.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04679	D3ECS8_GEOS4_201_286	76.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04679	Q930H5_RHIME_444_542	99.7

Sequence based PCA Plot of the family - PF04679 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=57 Length=8
Motif3 Start=69 Length=11
Motif4 Start=135 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay