3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04675

Details:

PFam ID : PF04675

PFam Domain Description : DNA ligase N terminus

Number of Sequence in 50% Dataset : 168

Number of Sequence in Full Dataset : 741

Average sequence length: 162.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04675	B6TRY6_MAIZE_35_118	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04675	E1GGX1_LOALO_1_102	99.5

Sequence based PCA Plot of the family - PF04675 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=119 Length=8
Motif3 Start=174 Length=8
Motif4 Start=155 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay