3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04670

Details:

PFam ID : PF04670

PFam Domain Description : Gtr1/RagA G protein conserved region

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 166

Average sequence length: 208.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04670	E7R3E0_PICAD_739_854	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04670	E2M2I0_MONPE_1_114	100

Sequence based PCA Plot of the family - PF04670 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=225 Length=8
Motif3 Start=51 Length=8
Motif4 Start=179 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay