3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04668

Details:

PFam ID : PF04668

PFam Domain Description : Twisted gastrulation (Tsg) protein conserved region

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 55

Average sequence length: 112.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04668	B4PHT5_DROYA_42_108	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04668	C3ZBY3_BRAFL_81_216	100

Sequence based PCA Plot of the family - PF04668 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=8
Motif3 Start=106 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay