3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04666

Details:

PFam ID : PF04666

PFam Domain Description : N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 163

Average sequence length: 216.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04666	Q4T597_TETNG_1_40	77.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04666	D8LCU4_ECTSI_222_373	100

Sequence based PCA Plot of the family - PF04666 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=301 Length=8
Motif2 Start=75 Length=8
Motif3 Start=191 Length=8
Motif4 Start=291 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay