3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04664

Details:

PFam ID : PF04664

PFam Domain Description : Opioid growth factor receptor (OGFr) conserved region

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 84

Average sequence length: 162.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04664	A0E1X2_PARTE_209_369	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04664	D8Q0C7_SCHCM_12_227	98.7

Sequence based PCA Plot of the family - PF04664 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=126 Length=8
Motif4 Start=47 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay