3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04659

Details:

PFam ID : PF04659

PFam Domain Description : Archaeal flagella protein

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 57

Average sequence length: 95.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04659	A3CU36_METMJ_138_215	52.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04659	D2RQ96_HALTV_2_110	100

Sequence based PCA Plot of the family - PF04659 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay