3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04658

Details:

PFam ID : PF04658

PFam Domain Description : TAFII55 protein conserved region

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 166

Average sequence length: 153.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04658	D8M9H4_BLAHO_6_140	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04658	B6KA08_TOXGO_220_407	100

Sequence based PCA Plot of the family - PF04658 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=71 Length=8
Motif3 Start=55 Length=11
Motif4 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay