3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04655

Details:

PFam ID : PF04655

PFam Domain Description : Aminoglycoside/hydroxyurea antibiotic resistance kinase

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 229

Average sequence length: 211.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04655	D2Q0R6_KRIFD_35_93	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04655	D2PZM1_KRIFD_45_166	99.5

Sequence based PCA Plot of the family - PF04655 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=170 Length=8
Motif3 Start=207 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay