3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04650

Details:

PFam ID : PF04650

PFam Domain Description : YSIRK type signal peptide

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 532

Average sequence length: 26.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04650	A7TE98_VANPO_194_206	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04650	E6IYQ7_STRAP_8_33	97.5

Sequence based PCA Plot of the family - PF04650 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay