3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04649

Details:

PFam ID : PF04649

PFam Domain Description : Mycoplasma hyorhinis VlpA repeat

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 6.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04649	A7TE98_VANPO_194_206	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04649	E0TJY9_MYCHH_154_166	100

Sequence based PCA Plot of the family - PF04649 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay