3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04648

Details:

PFam ID : PF04648

PFam Domain Description : Yeast mating factor alpha hormone

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 9

Average sequence length: 11.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04648	A7TE98_VANPO_194_206	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04648	A7TE98_VANPO_194_206	100

Sequence based PCA Plot of the family - PF04648 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay