3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04643

Details:

PFam ID : PF04643

PFam Domain Description : Motilin/ghrelin-associated peptide

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 50

Average sequence length: 54.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04643	D3YZQ4_MOUSE_14_173	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04643	E5FK25_9TELE_51_102	97.9

Sequence based PCA Plot of the family - PF04643 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay