3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04637

Details:

PFam ID : PF04637

PFam Domain Description : Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 18

Average sequence length: 439.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04637	D2K672_HCMV_18_543	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04637	Q91SH2_9BETA_16_536	100

Sequence based PCA Plot of the family - PF04637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=260 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay