3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04633

Details:

PFam ID : PF04633

PFam Domain Description : Herpesvirus BMRF2 protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 14

Average sequence length: 322.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04633	D0U1P7_MHV68_2_347	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04633	P88949_HHV8_5_354	100

Sequence based PCA Plot of the family - PF04633 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=29 Length=8
Motif3 Start=1 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay