3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04632

Details:

PFam ID : PF04632

PFam Domain Description : Fusaric acid resistance protein family

Number of Sequence in 50% Dataset : 246

Number of Sequence in Full Dataset : 604

Average sequence length: 488.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04632	D4F7Z0_EDWTA_4_549	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04632	C4SCE4_YERMO_1_660	100

Sequence based PCA Plot of the family - PF04632 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=9 Length=17
Motif3 Start=354 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay