3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04631

Details:

PFam ID : PF04631

PFam Domain Description : Baculovirus hypothetical protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 58

Average sequence length: 266.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04631	D7F5W9_9ABAC_4_324	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04631	A4L229_9VIRU_6_367	100

Sequence based PCA Plot of the family - PF04631 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=199 Length=8
Motif2 Start=262 Length=8
Motif3 Start=131 Length=8
Motif4 Start=228 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay