3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04627

Details:

PFam ID : PF04627

PFam Domain Description : Mitochondrial ATP synthase epsilon chain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 133

Average sequence length: 47.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04627	Q38B96_9TRYP_11_49	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04627	B6JWZ0_SCHJY_3_50	99.2

Sequence based PCA Plot of the family - PF04627 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=33

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay