3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04623

Details:

PFam ID : PF04623

PFam Domain Description : Adenovirus E1B protein N-terminus

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 24

Average sequence length: 64.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04623	D8RYQ0_SELML_119_304	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04623	Q4KSK9_9ADEN_1_70	95.6

Sequence based PCA Plot of the family - PF04623 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay