3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04620

Details:

PFam ID : PF04620

PFam Domain Description : Flagella accessory protein C (FlaC)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 64

Average sequence length: 188.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04620	A3IF72_9BACI_504_657	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04620	F2NVJ2_9SPIO_20_218	100

Sequence based PCA Plot of the family - PF04620 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay