3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04618

Details:

PFam ID : PF04618

PFam Domain Description : HD-ZIP protein N terminus

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 47

Average sequence length: 95.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04618	A5BLT4_VITVI_50_131	9.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04618	Q2A9X2_BRAOL_21_85	100

Sequence based PCA Plot of the family - PF04618 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay