3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04617

Details:

PFam ID : PF04617

PFam Domain Description : Hox9 activation region

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 86

Average sequence length: 165.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04617	E1C676_CHICK_1_115	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04617	B3TD78_SALSA_1_180	98.8

Sequence based PCA Plot of the family - PF04617 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=10 Length=8
Motif3 Start=23 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay