3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04616

Details:

PFam ID : PF04616

PFam Domain Description : Glycosyl hydrolases family 43

Number of Sequence in 50% Dataset : 423

Number of Sequence in Full Dataset : 2356

Average sequence length: 260.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04616	F0YSV6_9STRA_76_164	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04616	B7AK77_9BACE_85_214	99.5

Sequence based PCA Plot of the family - PF04616 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=103 Length=8
Motif2 Start=21 Length=8
Motif3 Start=9 Length=8
Motif4 Start=353 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay