3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04615

Details:

PFam ID : PF04615

PFam Domain Description : Utp14 protein

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 237

Average sequence length: 510.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04615	Q4Q5S1_LEIMA_136_978	76.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04615	B8BVA9_THAPS_65_311	100

Sequence based PCA Plot of the family - PF04615 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=695 Length=8
Motif2 Start=810 Length=8
Motif3 Start=341 Length=8
Motif4 Start=728 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay