3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04613

Details:

PFam ID : PF04613

PFam Domain Description : UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 725

Average sequence length: 71.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04613	C9P1R5_VIBME_1_83	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04613	A6GPG7_9BURK_30_111	100

Sequence based PCA Plot of the family - PF04613 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay