3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04612

Details:

PFam ID : PF04612

PFam Domain Description : Type II secretion system (T2SS), protein M

Number of Sequence in 50% Dataset : 187

Number of Sequence in Full Dataset : 323

Average sequence length: 143.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04612	C9P1R5_VIBME_1_83	88.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04612	A9IRQ5_BORPD_30_209	100

Sequence based PCA Plot of the family - PF04612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay