3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04609

Details:

PFam ID : PF04609

PFam Domain Description : Methyl-coenzyme M reductase operon protein C

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 68

Average sequence length: 198.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04609	E1K304_9EURY_1_266	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04609	E1K304_9EURY_1_266	100

Sequence based PCA Plot of the family - PF04609 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=248 Length=8
Motif3 Start=19 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay