3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04606

Details:

PFam ID : PF04606

PFam Domain Description : Ogr/Delta-like zinc finger

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 173

Average sequence length: 45.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04606	C1DBI1_LARHH_4_50	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04606	B1J6S4_PSEPW_7_53	98.2

Sequence based PCA Plot of the family - PF04606 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=20
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay