3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04602

Details:

PFam ID : PF04602

PFam Domain Description : Mycobacterial cell wall arabinan synthesis protein

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 117

Average sequence length: 779.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04602	D7EXA5_MYCTU_1_636	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04602	F1YMF6_9ACTO_3_1109	100

Sequence based PCA Plot of the family - PF04602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=225 Length=8
Motif2 Start=28 Length=14
Motif3 Start=153 Length=8
Motif4 Start=279 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay