3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04598

Details:

PFam ID : PF04598

PFam Domain Description : Gasdermin family

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 63

Average sequence length: 319.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04598	D3ZK05_RAT_4_76	21.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04598	F1PZL0_CANFA_4_475	100

Sequence based PCA Plot of the family - PF04598 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay