3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04588

Details:

PFam ID : PF04588

PFam Domain Description : Hypoxia induced protein conserved region

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 322

Average sequence length: 53.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04588	Q54XU9_DICDI_41_94	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04588	YL87_SCHPO_35_88	99.0

Sequence based PCA Plot of the family - PF04588 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay