3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04587

Details:

PFam ID : PF04587

PFam Domain Description : ADP-specific Phosphofructokinase/Glucokinase conserved region

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 108

Average sequence length: 383.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04587	Q8PZM0_METMA_170_387	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04587	C5L547_9ALVE_996_1453	100

Sequence based PCA Plot of the family - PF04587 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=316 Length=8
Motif2 Start=171 Length=8
Motif3 Start=271 Length=8
Motif4 Start=403 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay