3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04586

Details:

PFam ID : PF04586

PFam Domain Description : Caudovirus prohead protease

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 582

Average sequence length: 152.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04586	C5RCS4_WEIPA_1_75	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04586	Q89BA9_BRAJA_1_92	100

Sequence based PCA Plot of the family - PF04586 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=41 Length=8
Motif3 Start=58 Length=8
Motif4 Start=160 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay