3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04583

Details:

PFam ID : PF04583

PFam Domain Description : Baculoviridae p74 conserved region

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 49

Average sequence length: 226.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04583	Q9YWK3_NPVBS_1_124	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04583	B6S6U6_GVPU_365_622	100

Sequence based PCA Plot of the family - PF04583 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=205 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay