3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04576

Details:

PFam ID : PF04576

PFam Domain Description : Zein-binding

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 102

Average sequence length: 91.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04576	E1YLN2_9DELT_107_418	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04576	C0HG36_MAIZE_1_80	100

Sequence based PCA Plot of the family - PF04576 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay