3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04572

Details:

PFam ID : PF04572

PFam Domain Description : Alpha 1,4-glycosyltransferase conserved region

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 143

Average sequence length: 126.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04572	B7I8M8_ACIB5_152_261	95.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04572	D8S3H7_SELML_593_734	100

Sequence based PCA Plot of the family - PF04572 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=59 Length=8
Motif3 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay