3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04568

Details:

PFam ID : PF04568

PFam Domain Description : Mitochondrial ATPase inhibitor, IATP

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 173

Average sequence length: 81.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04568	B9M6X6_GEOSF_2_41	37.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04568	B3SA83_TRIAD_1_97	100

Sequence based PCA Plot of the family - PF04568 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay