3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04564

Details:

PFam ID : PF04564

PFam Domain Description : U-box domain

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 982

Average sequence length: 70.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04564	B8P210_POSPM_194_267	77.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04564	B8CBD3_THAPS_1183_1280	100

Sequence based PCA Plot of the family - PF04564 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=68 Length=8
Motif2 Start=80 Length=14
Motif3 Start=2 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay