3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04562

Details:

PFam ID : PF04562

PFam Domain Description : Dictyostelium spore coat protein, N terminus

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 27

Average sequence length: 112.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04562	D3BQG9_POLPA_26_105	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04562	F0Z9T6_DICPU_23_150	100

Sequence based PCA Plot of the family - PF04562 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay