3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04559

Details:

PFam ID : PF04559

PFam Domain Description : Herpesvirus UL17 protein

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 59

Average sequence length: 437.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04559	UL17_HHV6Z_133_427	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04559	UL17_EHV2_17_336	91.3

Sequence based PCA Plot of the family - PF04559 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=189 Length=8
Motif3 Start=451 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay