3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04558

Details:

PFam ID : PF04558

PFam Domain Description : Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 116

Average sequence length: 151.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04558	D8M7N4_BLAHO_1_89	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04558	E3L5R4_PUCGT_4_172	100

Sequence based PCA Plot of the family - PF04558 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay