3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04557

Details:

PFam ID : PF04557

PFam Domain Description : Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 91

Average sequence length: 83.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04557	A0BTM6_PARTE_161_227	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04557	E5SJB0_TRISP_247_298	98.8

Sequence based PCA Plot of the family - PF04557 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=72 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay