3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04556

Details:

PFam ID : PF04556

PFam Domain Description : DpnII restriction endonuclease

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 81

Average sequence length: 244.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04556	B9WSZ0_STRSU_4_303	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04556	B9WSZ0_STRSU_4_303	100

Sequence based PCA Plot of the family - PF04556 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=192 Length=8
Motif2 Start=244 Length=8
Motif3 Start=20 Length=8
Motif4 Start=129 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay