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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04554
Details:

PFam ID : PF04554

PFam Domain Description : Extensin-like region

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 107

Average sequence length: 50.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04554Q76KW2_PEA_1_32100
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04554Q76KW2_PEA_1_32100
Sequence based PCA Plot of the family - PF04554 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=7 Length=14
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay