3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04554 Details: PFam ID : PF04554 PFam Domain Description : Extensin-like region Number of Sequence in 50% Dataset : 3 Number of Sequence in Full Dataset : 107 Average sequence length: 50.6 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04554Q76KW2_PEA_1_32100 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04554Q76KW2_PEA_1_32100 Sequence based PCA Plot of the family - PF04554 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=34 Length=8Motif2 Start=25 Length=8Motif3 Start=7 Length=14 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04554
PFam Domain Description : Extensin-like region
Number of Sequence in 50% Dataset : 3
Number of Sequence in Full Dataset : 107
Average sequence length: 50.6
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER