3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04551

Details:

PFam ID : PF04551

PFam Domain Description : GcpE protein

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 892

Average sequence length: 341.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04551	C0ATF5_9ENTR_1_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04551	E2T2Q8_9RALS_1_370	100

Sequence based PCA Plot of the family - PF04551 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=166 Length=8
Motif3 Start=77 Length=8
Motif4 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay