3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04548

Details:

PFam ID : PF04548

PFam Domain Description : AIG1 family

Number of Sequence in 50% Dataset : 180

Number of Sequence in Full Dataset : 681

Average sequence length: 176.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04548	C4Y4L4_CLAL4_150_217	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04548	D7LXY9_ARALL_67_156	100

Sequence based PCA Plot of the family - PF04548 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=60 Length=8
Motif2 Start=126 Length=8
Motif3 Start=163 Length=8
Motif4 Start=1 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay