3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04547

Details:

PFam ID : PF04547

PFam Domain Description : Calcium-activated chloride channel

Number of Sequence in 50% Dataset : 219

Number of Sequence in Full Dataset : 453

Average sequence length: 398.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04547	C4Y4L4_CLAL4_150_217	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04547	F1KT19_ASCSU_5_286	100

Sequence based PCA Plot of the family - PF04547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=258 Length=8
Motif2 Start=626 Length=8
Motif3 Start=111 Length=8
Motif4 Start=3 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay