3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04538 Details: PFam ID : PF04538 PFam Domain Description : Brain expressed X-linked like family Number of Sequence in 50% Dataset : 11 Number of Sequence in Full Dataset : 60 Average sequence length: 121.1 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04538TCAL1_HUMAN_1_15650 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04538TCAL1_HUMAN_1_156100 Sequence based PCA Plot of the family - PF04538 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=28 Length=8Motif2 Start=19 Length=8Motif3 Start=10 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04538
PFam Domain Description : Brain expressed X-linked like family
Number of Sequence in 50% Dataset : 11
Number of Sequence in Full Dataset : 60
Average sequence length: 121.1
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER