3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04537

Details:

PFam ID : PF04537

PFam Domain Description : Herpesvirus UL55 protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 17

Average sequence length: 150.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04537	B4XS01_9ALPH_11_181	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04537	E2IUB5_SHV1_6_183	100

Sequence based PCA Plot of the family - PF04537 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay